A listing of tools available for predictive microbial (PM) modelling in food and quantitative microbial risk assessment (QMRA)
PM model creation / fitting tools
- biogrowth (R package)
- biogrowth-web (Shiny app)
- Bioinactivation (R package)
- Bioinactivation (Shiny app)
- Bioinactivation FE
- Cardinal Fit (Shiny app)
- ComBase
- DMFit
- GInaFiT
- growth rates (R package)
- IPMP
- Microrisk Lab (Shiny app)
- nlsMicrobio (R package)
- OptiPa
- PMM-Lab
PM model-based predictions
PM model repositories
- ComBase
- GroPIN
- Microbial Responses Viewer (MRV)
- MicroHibro: Predictive Models and Sampling Plans
- openFSMR – search engine for predictive microbial models
- Pathogen Modeling Program (PMP)
- RAKIP Web Portal
Prediction tools (aphabetic order)
- Bioinactivation FE
- ComBase Predictor
- Combase Premium
- DMRI – predictive models for meat
- E. coli Inactivation in Fermented Meats Model
- Food Spoilage and Safety Predictor (FSSP)
- FISHMAP
- GroPIN
- Listeria Control Model 2012
- ListeriaCardinalModel
- Microbial Responses Viewer (MRV)
- MicroHibro: Predictive Models and Sampling Plans
- MLA Refrigeration Index Calculator
- Pathogen Modeling Program (PMP)
- PMM-Lab
- Process lethality determination spreadsheet
- Perfringens Predictor
- Praedicere Possumus
- RAKIP Web Portal
- Shelf Stability Predictor
- Sym’Previus
- Therm 2.0
Tools for quantitative microbial risk assessment
- A swift Quantitative Microbiological Risk Assessment tool (sQMRA)
- FDA-iRISK
- fitdistrplus (R package)
- FSK-Lab
- gQMRA (R codes)
- Interactive online Catalogue on Risk Assessment (ICRA)
- Lis-RA (Excel spreadsheet)
- mc2d (R package)
- MicroHibro: Risk Model
- RAKIP Web Portal
- Risk Ranger
- @Risk
- Salmonella in eggs (Shiny app)
Other resources
- ComBase (data)
- Emerging Zoonoses Information and Priority systems (EZIPs)
- EFSA Knowlege Junction (KJ)
- EFSA zoonoses, antimicrobial resistance and food-borne outbreaks
- FDA’s Fresh Produce Risk Ranking Tool
- FMJ (Food Modelling Journal)
- Food Commodity Intake Database (FCID)
- FoodProcess-Lab
- FOSCOLLAB: a global platform for food safety data and information
- FRISBEE
- PredOxyPack
- The European Surveillance System (TESSy)
- Tool for Risk based Microbiological Criteria (TRiMiCri)
- bioOED (R package) for Optimal
Experimental Design - Pathogens in Foods (Database)
- D-database microbial inactivation data in foods