Wednesday, 08.11.2017 – Basic Training
10:00-11:00 a.m.
Welcome and introduction
Karsten Nöckler, Armin Weiser (BfR)
11:00-11:30 a.m.
Introduction to outbreak investigation
Marion Gottschald (BfR)
11:30-12:30 p.m.
The challenge to trace the source of contamination in the international food and feed supply chain
Olaf Mosbach-Schulz (EFSA)
12:30-1:30 p.m.
Lunch break
1:30-2:00 p.m.
Introduction to FoodChain-Lab (FCL) and KNIME
Armin Weiser (BfR)
2:00-2:30 p.m.
Live demonstration of FCL
Armin Weiser (BfR)
2:30-2:50 p.m.
Hands-on training (chosen tutorials from website)
Armin Weiser, Alexander Falenski, Marion Gottschald, Marco Rügen (BfR)
2:50-3:05 p.m.
Coffee break
3:05-4:30 p.m.
Hands-on training (chosen tutorials from website) (continued)
Armin Weiser, Alexander Falenski, Marion Gottschald, Marco Rügen (BfR)
4:30-5:00 p.m.
Open questions
All
from 6 p.m.
Drinks and dinner
Thursday, 09.11.2017 – Basic Training
9:00-09:45 a.m.
Data structures, data collection templates (start-tracing, back-/forward, all-in-one, simple), potential data needs in detail
Alexander Falenski (BfR)
- 15 Data collection and import
- 16 Tracing Backward Template
- 17 Finding and removing duplicates
- Data-for-tutorials-15-17
09:45-10.00 a.m.
Coffee break
10:00-11:00 a.m.
Data structures, data collection templates (start-tracing, back-/forward, all-in-one, simple), potential data needs in detail (continued)
Alexander Falenski (BfR)
11:00-12:00 a.m.
Wider applications of KNIME tools
Armin Weiser (BfR)
- Network analysis
- Geocoding with Photon
- PlayGround
12:00-1:00 p.m.
Lunch break
1:00-2:30 p.m.
Scenario session
Marion Gottschald, Alexander Falenski, Armin Weiser, Marco Rügen (BfR)
Olaf Mosbach-Schulz (EFSA)
2:30-2.45 p.m.
Coffee break
2.45-4:15 p.m.
Scenario session (continued)
Marion Gottschald, Alexander Falenski, Armin Weiser, Marco Rügen (BfR)
Olaf Mosbach-Schulz (EFSA)
4:15-5:00 p.m.
Discussion and open questions
All
Friday, 10.11.2017 – Advanced training and next steps
9:00-9:30 a.m.
FCL web view and web edit
Marco Rügen (BfR)
9:30-10:30 p.m.
Contributions of participants
- Shaun Smith (FSAI): Multistate outbreak of hepatitis A virus (HAV) linked to frozen berries – a European case study
10:30-10:45 a.m.
Coffee break
10:45-12:00 a.m.
Contributions of participants (continued)
- Tina Potter (FSA): Salmonella Enteritidis outbreak 2017 (working title)
- FCL workflow for Salmonella Enteritidis outbreak
12:00-1:00 p.m.
Lunch break
1:00-2:30 p.m.
Contributions of participants (continued)
- Kata Kerekes (Nébih): FoodChain-Lab for analysing Electronic Trade and Transport Control data
- Andrzej Jarynowski (Jagiellonian University Cracow): Modeling African Swine Fever in Poland
Group work on RASFF notifications
Olaf Mosbach-Schulz (EFSA)
2:30-3:30 p.m.
What and where next? Group discussion to cover:
– Feature requests
– Interfaces with other software
– Additional analyses
– Transition probabilities and further roll out
– Feedback
3:30 p.m.
End of the workshop