FoodChain-Lab Training, Berlin (Germany), November 2017

Wednesday, 08.11.2017 – Basic Training

10:00-11:00 a.m.
Welcome and introduction
Karsten Nöckler, Armin Weiser (BfR)

11:00-11:30 a.m.
Introduction to outbreak investigation
Marion Gottschald (BfR)

11:30-12:30 p.m.
The challenge to trace the source of contamination in the international food and feed supply chain
Olaf Mosbach-Schulz (EFSA)

12:30-1:30 p.m.
Lunch break

1:30-2:00 p.m.
Introduction to FoodChain-Lab (FCL) and KNIME
Armin Weiser (BfR)

2:00-2:30 p.m.
Live demonstration of FCL
Armin Weiser (BfR)

2:30-2:50 p.m.
Hands-on training (chosen tutorials from website)
Armin Weiser, Alexander Falenski, Marion Gottschald, Marco Rügen (BfR)

2:50-3:05 p.m.
Coffee break

3:05-4:30 p.m.
Hands-on training (chosen tutorials from website) (continued)
Armin Weiser, Alexander Falenski, Marion Gottschald, Marco Rügen (BfR)

4:30-5:00 p.m.
Open questions
All

from 6 p.m.
Drinks and dinner

Thursday, 09.11.2017 – Basic Training

9:00-09:45 a.m.
Data structures, data collection templates (start-tracing, back-/forward, all-in-one, simple), potential data needs in detail
Alexander Falenski (BfR)

09:45-10.00 a.m.
Coffee break

10:00-11:00 a.m.
Data structures, data collection templates (start-tracing, back-/forward, all-in-one, simple), potential data needs in detail (continued)
Alexander Falenski (BfR)

11:00-12:00 a.m.
Wider applications of KNIME tools
Armin Weiser (BfR)

12:00-1:00 p.m.
Lunch break

1:00-2:30 p.m.
Scenario session
Marion Gottschald, Alexander Falenski, Armin Weiser, Marco Rügen (BfR)
Olaf Mosbach-Schulz (EFSA)

2:30-2.45 p.m.
Coffee break

2.45-4:15 p.m.
Scenario session (continued)
Marion Gottschald, Alexander Falenski, Armin Weiser, Marco Rügen (BfR)
Olaf Mosbach-Schulz (EFSA)

4:15-5:00 p.m.
Discussion and open questions
All

Friday, 10.11.2017 – Advanced training and next steps

9:00-9:30 a.m.
FCL web view and web edit
Marco Rügen (BfR)

9:30-10:30 p.m.
Contributions of participants

10:30-10:45 a.m.
Coffee break

10:45-12:00 a.m.
Contributions of participants (continued)

  • Tina Potter (FSA): Salmonella Enteritidis outbreak 2017 (working title)
  • FCL workflow for Salmonella Enteritidis outbreak

12:00-1:00 p.m.
Lunch break

1:00-2:30 p.m.
Contributions of participants (continued)

Group work on RASFF notifications
Olaf Mosbach-Schulz (EFSA)

2:30-3:30 p.m.
What and where next? Group discussion to cover:
– Feature requests
– Interfaces with other software
– Additional analyses
– Transition probabilities and further roll out
– Feedback

3:30 p.m.
End of the workshop